Sequence Browser (P38398-1)

UniProt (Ref Seq)
Displayed Structure
Experimental Tertiary/Complex (PDB:XRay/EM)
Experimental Tertiary/Complex (PDB:NMR)
Modelled Tertiary (Phyre)
If the whole structure is coloured grey in '3D Structure Viewer' panel, please click the icon - on the top left corner of the viewer.
(If nothing changes then 'Sequence ↔ Structure' mapping may be unavailable).
1
1863
Isoform
Remark
Ref
May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
VSP_047891
No experimental confirmation available. Ref.8 (AAI15038) sequence is in conflict in position: 1461:N->D.
VSP_055404
No experimental confirmation available.
VSP_035399 VSP_043797 VSP_043798
P38398-1  
VSP_035399 VSP_043797
No experimental confirmation available. The N-terminus is confirmed by several cDNAs.
VSP_057569
Produced by alternative initiation at Met-18 of isoform 1.
VSP_035396
VSP_035398
Click on Isoform of interest to be redirected to the corresponding page
Type
Variation
Position
splice variant
Missing
1 - 47
splice variant
Missing
64 - 1863
splice variant
Missing
264 - 1366
splice variant
A → DSHIHGQRNNSMFSKRPREHIS
1453
sequence variant
S → F
4
sequence variant
V → A
11
sequence variant
I → V
21
sequence variant
E → K
23
sequence variant
K → Q
45
sequence variant
C → G
64
sequence variant
D → Y
67
splice variant
Missing
1 - 17
splice variant
Missing
224 - 1365
splice variant
Missing
1453
splice variant
DQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPHSHY → GCPPNCGCAARCLDRGQWLPCNWADV
1778 - 1863
sequence variant
E → K
10
sequence variant
M → T
18
sequence variant
L → S
22
sequence variant
L → F
30
sequence variant
C → G
61
sequence variant
C → Y
64
sequence variant
R → K
71
sequence variant
N → K
132
sequence variant
L → F
147
sequence variant
Y → C
105
sequence variant
P → H
142
sequence variant
S → R
153
sequence variant
R → W
170
sequence variant
V → I
191
sequence variant
T → M
231
sequence variant
D → V
245
sequence variant
V → L
271
sequence variant
G → S
275
sequence variant
Q → R
356
sequence variant
I → M
379
sequence variant
Y → D
465
sequence variant
G → V
552
sequence variant
L → F
668
sequence variant
D → N
695
sequence variant
D → Y
749
sequence variant
V → A
772
sequence variant
P → L
798
sequence variant
K → E
820
sequence variant
H → Y
835
sequence variant
R → W
841
sequence variant
R → C
866
sequence variant
P → L
871
sequence variant
L → S
892
sequence variant
G → D
960
sequence variant
M → I
1008
sequence variant
E → G
1038
sequence variant
V → A
1047
sequence variant
S → N
1101
sequence variant
S → G
1140
sequence variant
P → S
1150
sequence variant
S → I
1187
sequence variant
R → I
1204
sequence variant
E → G
1210
sequence variant
S → Y
1217
sequence variant
F → L
1226
sequence variant
R → G
1243
sequence variant
L → S
1267
sequence variant
S → P
1297
sequence variant
S → R
1301
sequence variant
R → G
1347
sequence variant
M → V
1400
sequence variant
L → P
1407
sequence variant
S → P
1431
sequence variant
R → Q
1443
sequence variant
S → C
1486
sequence variant
S → I
1512
sequence variant
T → I
1561
sequence variant
K → E
1606
sequence variant
T → A
1620
sequence variant
M → T
1628
sequence variant
P → L
1637
sequence variant
S → F
1651
sequence variant
M → I
1652
sequence variant
F → C
1662
sequence variant
T → A
1685
sequence variant
H → Q
1686
sequence variant
Missing
1688
sequence variant
K → Q
1690
sequence variant
D → N
1692
sequence variant
R → Q
1699
sequence variant
G → A
1706
sequence variant
A → E
1708
sequence variant
S → R
1715
sequence variant
T → A
1720
sequence variant
V → A
1736
sequence variant
D → G
1739
sequence variant
H → Q
1746
sequence variant
R → T
1753
sequence variant
I → S
1766
sequence variant
L → P
165
sequence variant
S → Y
186
sequence variant
E → K
227
sequence variant
H → R
239
sequence variant
L → V
246
sequence variant
V → M
271
sequence variant
P → S
346
sequence variant
Missing
369
sequence variant
F → L
461
sequence variant
R → I
507
sequence variant
N → I
656
sequence variant
D → N
693
sequence variant
N → D
723
sequence variant
L → F
758
sequence variant
G → C
778
sequence variant
N → Y
810
sequence variant
T → K
826
sequence variant
R → Q
841
sequence variant
Y → H
856
sequence variant
R → Q
866
sequence variant
H → Y
888
sequence variant
I → L
925
sequence variant
F → S
989
sequence variant
T → I
1025
sequence variant
S → N
1040
sequence variant
E → A
1060
sequence variant
S → I
1139
sequence variant
S → N
1140
sequence variant
K → R
1183
sequence variant
Q → H
1200
sequence variant
K → N
1207
sequence variant
E → K
1214
sequence variant
E → D
1219
sequence variant
N → K
1236
sequence variant
E → K
1250
sequence variant
E → V
1282
sequence variant
Missing
1297
sequence variant
E → K
1346
sequence variant
V → I
1378
sequence variant
K → N
1406
sequence variant
M → T
1411
sequence variant
R → G
1443
sequence variant
S → G
1448
sequence variant
R → M
1495
sequence variant
V → M
1534
sequence variant
R → P
1589
sequence variant
S → G
1613
sequence variant
A → G
1623
sequence variant
M → V
1628
sequence variant
A → P
1641
sequence variant
S → P
1651
sequence variant
S → F
1655
sequence variant
V → M
1665
sequence variant
T → I
1685
sequence variant
H → R
1686
sequence variant
M → R
1689
sequence variant
T → I
1691
sequence variant
C → R
1697
sequence variant
R → W
1699
sequence variant
G → E
1706
sequence variant
V → G
1713
sequence variant
W → C
1718
sequence variant
E → K
1735
sequence variant
G → R
1738
sequence variant
D → V
1739
sequence variant
P → R
1749
sequence variant
L → P
1764
sequence variant
C → S
1767
sequence variant
M → K
1775
sequence variant
G → V
1770
sequence variant
M → R
1775
sequence variant
L → P
1780
sequence variant
L → P
1786
sequence variant
A → T
1789
sequence variant
V → D
1804
sequence variant
P → S
1812
sequence variant
H → L
1862
mutagenesis site
I → E
26
mutagenesis site
S → N
308
mutagenesis site
S → A
1239
mutagenesis site
S → A
1298
mutagenesis site
S → A
1387
mutagenesis site
S → A
1423
mutagenesis site
S → A
1466
mutagenesis site
S → A
1655
mutagenesis site
F → S
1662
mutagenesis site
Y → A
1666
mutagenesis site
K → E
1671
mutagenesis site
K → M
1702
mutagenesis site
S → A
1755
mutagenesis site
E → K
1836
sequence conflict
Missing
148
sequence conflict
S → P
713
sequence conflict
S → P
1426
sequence variant
P → S
1776
sequence variant
W → C
1782
sequence variant
G → V
1788
sequence variant
E → D
1794
sequence variant
P → R
1812
sequence variant
W → R
1837
mutagenesis site
I → A
26
mutagenesis site
R → G
71
mutagenesis site
S → A
1143
mutagenesis site
S → A
1280
mutagenesis site
S → A
1330
mutagenesis site
T → A
1394
mutagenesis site
S → A
1457
mutagenesis site
S → A
1524
mutagenesis site
G → D
1656
mutagenesis site
M → K
1663
mutagenesis site
R → E
1670
mutagenesis site
T → A
1700
mutagenesis site
G → E
1738
mutagenesis site
R → P
1835
sequence conflict
I → T
89
sequence conflict
A → V
253
sequence conflict
G → R
1077
sequence conflict
E → G
1527

To analyse the structural impact of your missense variant:

  • Select the corresponding experimental/modelled structure from the "Available Structures" Panel.
  • Right-click on the target structure and download it.
  • Go to our web server Missense3D to analyse structural impact.

  • Go to Missense3D
Protein:
Other Names:
RING finger protein 53, RING-type E3 ubiquitin transferase BRCA1
Primary Accession:
Other Accessions:
E9PFZ0, O15129, Q1RMC1, Q3LRJ0, Q3LRJ6, Q6IN79, Q7KYU9
Gene :
BRCA1*, synonyms (RNF53)
Organism :
Human
Entry Name :
Length :
1,863
Mass (Da) :
207,721
Last modified :
01-Jan-1995
Version :
v2
Isoforms :
8 
Variants :
212 
Interactions :
33 
Structures :
Experimental 27 | Phyre prediction 4

E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator. Inhibits lipid synthesis by binding to inactive phosphorylated ACACA and preventing its dephosphorylation. Contributes to homologous recombination repair (HRR) via its direct interaction with PALB2, fine-tunes recombinational repair partly through its modulatory role in the PALB2-dependent loading of BRCA2-RAD51 repair machinery at DNA breaks. Component of the BRCA1-RBBP8 complex which regulates CHEK1 activation and controls cell cycle G2/M checkpoints on DNA damage via BRCA1-mediated ubiquitination of RBBP8. Acts as a transcriptional activator (PubMed:20160719).

With
Entry
IntAct
Exp
ACACA
Q13085
EBI-349905, EBI-717681
2
BARD1
Q99728
EBI-349905, EBI-473181
14
BRAP
Q7Z569
EBI-349905, EBI-349900
3
BRIP1
Q9BX63
EBI-349905, EBI-3509650
15
CCNE1
P24864
EBI-349905, EBI-519526
2
ESR1
P03372
EBI-349905, EBI-78473
12
FHL2
Q14192
EBI-349905, EBI-701903
6
H2AFX
P16104
EBI-349905, EBI-494830
4
HSPD1
P10809
EBI-349905, EBI-352528
2
KPNA2
P52292
EBI-349905, EBI-349938
3
PALB2
Q86YC2
EBI-349905, EBI-1222653
23
PPP1CB
P62140
EBI-349905, EBI-352350
3
RBBP8
Q99708
EBI-349905, EBI-745715
10
SUMO2
P61956
EBI-349905, EBI-473220
2
UIMC1
Q96RL1
EBI-349905, EBI-725300
9
ZCCHC8
Q6NZY4
EBI-349905, EBI-1263058
2
ABRAXAS1
Q6UWZ7
EBI-349905, EBI-1263451
14
BAP1
Q92560
EBI-349905, EBI-1791447
3
BCL2
P10415
EBI-349905, EBI-77694
6
BRAT1
Q6PJG6
EBI-349905, EBI-10826195
6
CCND1
P24385
EBI-349905, EBI-375001
3
CHEK1
O14757
EBI-349905, EBI-974488
3
Ezh2
Q61188
EBI-349905, EBI-904311
5
GTF2I
P78347
EBI-349905, EBI-359622
5
HMMR
O75330
EBI-349905, EBI-2556203
4
IFI16
Q16666
EBI-349905, EBI-2867186
9
NELFB
Q8WX92
EBI-349905, EBI-347721
5
PPP1CA
P62136
EBI-349905, EBI-357253
2
PPP1CC
P36873
EBI-349905, EBI-356283
2
SUMO1
P63165
EBI-349905, EBI-80140
3
TOP2A
P11388
EBI-349905, EBI-539628
3
UIMC1
Q96RL1-1
EBI-349905, EBI-9640371
2
ZNF350
Q9GZX5
EBI-349905, EBI-396421
3