Sequence Browser (P13010-1)

UniProt (Ref Seq)
Displayed Structure
Experimental Tertiary/Complex (PDB:XRay/EM)
Experimental Tertiary/Complex (PDB:NMR)
Modelled Tertiary (Phyre)
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1
732
Isoform
Remark
Ref
P13010-1  
Click on Isoform of interest to be redirected to the corresponding page
Type
Variation
Position
sequence variant
L → F
463
sequence variant
I → V
508
mutagenesis site
EE → AA
720 - 721
mutagenesis site
DD → AA
726 - 727
sequence conflict
MDV → YSY
14 - 16
sequence conflict
V → A
117
sequence conflict
I → V
134
sequence conflict
R → S
178
sequence conflict
R → L
315
sequence conflict
M → R
461
sequence conflict
T → G
479
sequence conflict
I → T
540

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Protein:
Other Names:
86 kDa subunit of Ku antigen, ATP-dependent DNA helicase 2 subunit 2, ATP-dependent DNA helicase II 80 kDa subunit, CTC box-binding factor 85 kDa subunit, DNA repair protein XRCC5, Ku80, Ku86, Lupus Ku autoantigen protein p86, Nuclear factor IV, Thyroid-lupus autoantigen, X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
Primary Accession:
Other Accessions:
A8K3X5, Q0Z7V0, Q4VBQ5, Q53HH7, Q7M4N0, Q9UCQ0, Q9UCQ1
Gene :
XRCC5*, synonyms (G22P2)
Organism :
Human
Entry Name :
Length :
732
Mass (Da) :
82,705
Last modified :
23-Jan-2007
Version :
v3
Isoforms :
1 
Variants :
12 
Interactions :
10 
Structures :
Experimental 6 | Phyre prediction 2

Single-stranded DNA-dependent ATP-dependent helicase. Has a role in chromosome translocation. The DNA helicase II complex binds preferentially to fork-like ends of double-stranded DNA in a cell cycle-dependent manner. It works in the 3'-5' direction. Binding to DNA may be mediated by XRCC6. Involved in DNA non-homologous end joining (NHEJ) required for double-strand break repair and V(D)J recombination. The XRCC5/6 dimer acts as regulatory subunit of the DNA-dependent protein kinase complex DNA-PK by increasing the affinity of the catalytic subunit PRKDC to DNA by 100-fold. The XRCC5/6 dimer is probably involved in stabilizing broken DNA ends and bringing them together (PubMed:12145306, PubMed:20383123, PubMed:7957065, PubMed:8621488). The assembly of the DNA-PK complex to DNA ends is required for the NHEJ ligation step. In association with NAA15, the XRCC5/6 dimer binds to the osteocalcin promoter and activates osteocalcin expression (PubMed:20383123). The XRCC5/6 dimer probably also acts as a 5'-deoxyribose-5-phosphate lyase (5'-dRP lyase), by catalyzing the beta-elimination of the 5' deoxyribose-5-phosphate at an abasic site near double-strand breaks. XRCC5 probably acts as the catalytic subunit of 5'-dRP activity, and allows to 'clean' the termini of abasic sites, a class of nucleotide damage commonly associated with strand breaks, before such broken ends can be joined. The XRCC5/6 dimer together with APEX1 acts as a negative regulator of transcription (PubMed:8621488). Plays a role in the regulation of DNA virus-mediated innate immune response by assembling into the HDP-RNP complex, a complex that serves as a platform for IRF3 phosphorylation and subsequent innate immune response activation through the cGAS-STING pathway.

With
Entry
IntAct
Exp
APLF
Q8IW19
EBI-357997, EBI-1256044
13
GOLPH3
Q9H4A6
EBI-357997, EBI-2465479
2
HSPB1
P04792
EBI-357997, EBI-352682
2
PPM1G
O15355
EBI-357997, EBI-725702
3
TPT1
P13693
EBI-357997, EBI-1783169
4
COIL
P38432
EBI-357997, EBI-945751
6
HOXB7
P09629
EBI-357997, EBI-1248457
9
PAXX
Q9BUH6-1
EBI-357997, EBI-16137878
5
PRKDC
P78527
EBI-357997, EBI-352053
8
XRCC6
P12956
EBI-357997, EBI-353208
16