Sequence Browser (Q96GM5-1)

UniProt (Ref Seq)
Displayed Structure
Experimental Tertiary/Complex (PDB:XRay/EM)
Experimental Tertiary/Complex (PDB:NMR)
Modelled Tertiary (Phyre)
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1
515
Isoform
Remark
Ref
No experimental confirmation available.
VSP_004179
Q96GM5-1  
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Type
Variation
Position
splice variant
Missing
423 - 463
sequence conflict
S → T
349

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Protein:
Other Names:
60 kDa BRG-1/Brm-associated factor subunit A, BRG1-associated factor 60A, SWI/SNF complex 60 kDa subunit
Primary Accession:
Other Accessions:
A6NN27, Q92924, Q9Y635
Gene :
SMARCD1*, synonyms (BAF60A)
Organism :
Human
Entry Name :
Length :
515
Mass (Da) :
58,233
Last modified :
26-Jan-2009
Version :
v2
Isoforms :
2 
Variants :
2 
Interactions :
14 
Structures :
Experimental 0 | Phyre prediction 1

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner (PubMed:8804307). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on vitamin D-mediated transcriptional activity from an enhancer vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer (PubMed:14698202). Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation (PubMed:12917342).

With
Entry
IntAct
Exp
KRT15
P19012
EBI-358489, EBI-739566
3
KRT38
O76015
EBI-358489, EBI-1047263
4
MED4
Q9NPJ6
EBI-358489, EBI-394607
5
PSTPIP1
O43586
EBI-358489, EBI-1050964
4
SMARCC1
Q92922
EBI-358489, EBI-355653
4
USHBP1
Q8N6Y0
EBI-358489, EBI-739895
5
VPS37B
Q9H9H4
EBI-358489, EBI-4400866
6
KRT31
Q15323
EBI-358489, EBI-948001
4
LDOC1
O95751
EBI-358489, EBI-740738
3
Nr3c1
P06536
EBI-358489, EBI-1187143
2
SMARCA4
P51532
EBI-358489, EBI-302489
7
TRIM54
Q9BYV2
EBI-358489, EBI-2130429
4
USP54
Q70EL1-9
EBI-358489, EBI-11975223
4
WWP2
O00308
EBI-358489, EBI-743923
4